Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2672

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726293 to 729723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730581 to 733538 11040 mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734339 to 738341 11041

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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729,665 + 0.5
729,703 + 0.6
729,785 - 0.6
729,799 + 1.8
729,956 - -0.5
729,959 - 0.7
729,968 - 0.2
729,969 + 0.4
729,970 + -0.5
729,999 - 0.9
730,001 - 0.6
730,013 + 0.6
730,013 + 2.1
730,087 - 0.7
730,112 - 0.0
730,119 + -0.1
730,122 - 2.3
730,144 - 0.7
730,146 - 0.5
730,146 - -0.4
730,147 + 0.1
730,152 - 0.5
730,152 + -0.1
730,167 + -0.8
730,172 - -0.2
730,185 + 0.1
730,213 + -0.5
730,213 + -0.1
730,287 + 0.3
730,300 + -0.2
730,309 + 0.5
730,323 + 0.4
730,330 - 0.5
730,340 + 0.2
730,470 - 0.8
730,472 - 1.2
730,473 - -0.6
730,476 - 0.3
730,484 - 0.7
730,497 + 1.0
730,504 + -0.4
730,505 + 1.0
730,507 - 0.1
730,618 - 0.9
730,786 - -0.2
731,465 - 11040 mRNA_2672 0.30 -0.5
731,639 + 11040 mRNA_2672 0.36 1.1
731,642 - 11040 mRNA_2672 0.36 -0.8
732,207 + 11040 mRNA_2672 0.55 0.7
732,262 - 11040 mRNA_2672 0.57 -0.1
732,392 + 11040 mRNA_2672 0.61 0.1
732,614 + 11040 mRNA_2672 0.69 1.6
732,964 + 11040 mRNA_2672 0.81 0.3
733,097 - 11040 mRNA_2672 0.85 1.2
733,154 + 11040 mRNA_2672 0.87 1.1
733,396 - -0.6
733,546 + 0.2
733,549 + 0.2
733,683 - -0.5
733,703 - 1.1
733,705 + 0.3
733,723 + -0.2
733,728 - -0.4
733,838 - 0.4
733,841 - 0.7
733,870 - 0.0
734,150 + 0.5