Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2582

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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493,589 + 10949 mRNA_2581 0.44 1.1
493,706 + 10949 mRNA_2581 0.52 -0.8
493,878 - 10949 mRNA_2581 0.63 0.3
494,054 - 10949 mRNA_2581 0.75 0.4
494,058 + 10949 mRNA_2581 0.75 0.3
494,156 - 10949 mRNA_2581 0.82 0.5
494,190 + 10949 mRNA_2581 0.84 1.2
494,199 + 10949 mRNA_2581 0.85 0.1
494,201 + 10949 mRNA_2581 0.85 0.4
494,232 + 10949 mRNA_2581 0.87 0.2
494,321 - 0.2
494,326 - 1.6
494,479 - 0.6
494,633 + 10950 mRNA_2582 0.26 0.9
494,638 - 10950 mRNA_2582 0.27 0.8
494,651 - 10950 mRNA_2582 0.29 0.8
494,654 + 10950 mRNA_2582 0.29 -0.1
494,675 - 10950 mRNA_2582 0.33 -0.3
494,680 + 10950 mRNA_2582 0.33 0.2
494,765 - 10950 mRNA_2582 0.47 -0.9
494,769 - 10950 mRNA_2582 0.48 -0.2
494,887 - 10950 mRNA_2582 0.66 0.6
494,926 + 10950 mRNA_2582 0.73 0.2
494,937 + 10950 mRNA_2582 0.74 -0.1
494,952 - 10950 mRNA_2582 0.77 -0.0
495,085 + 0.3
495,119 - 0.0
495,263 + -1.3
495,401 + 0.1
495,972 - 10951 mRNA_2583 0.18 -1.0