Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2539

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393822 to 395821 10906 mRNA_2539: 10907 - Hypothetical Protein, at 396094 to 398437 10907 mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398635 to 399613 10908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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395,138 - 10906 mRNA_2538 0.66 0.6
395,441 + 10906 mRNA_2538 0.81 0.2
395,554 - 10906 mRNA_2538 0.87 0.4
395,578 + 10906 mRNA_2538 0.88 -0.8
395,600 + 10906 mRNA_2538 0.89 -0.1
395,608 + 10906 mRNA_2538 0.89 0.3
395,610 - 10906 mRNA_2538 0.89 -0.1
395,747 + 1.0
395,794 + 1.1
395,926 + -0.7
396,024 + 0.5
396,048 - 1.1
396,172 + 0.3
396,180 - 0.3
396,196 - 0.4
396,196 - 0.5
396,208 + -0.3
396,367 + 10907 mRNA_2539 0.12 1.4
396,464 + 10907 mRNA_2539 0.16 -0.2
396,528 + 10907 mRNA_2539 0.19 -0.8
396,871 + 10907 mRNA_2539 0.33 0.1
396,917 - 10907 mRNA_2539 0.35 -0.1
396,951 - 10907 mRNA_2539 0.37 -1.6
397,022 + 10907 mRNA_2539 0.40 1.0
397,658 + 10907 mRNA_2539 0.67 0.3
397,921 + 10907 mRNA_2539 0.78 0.7
397,927 + 10907 mRNA_2539 0.78 0.4
398,070 + 10907 mRNA_2539 0.84 0.4
398,075 - 10907 mRNA_2539 0.85 -0.6
398,288 + -0.9
398,364 + -0.1
398,406 - 0.0
398,515 + 0.0
398,515 + 0.5
398,618 + -1.4
398,635 - 0.1
398,792 + 10908 mRNA_2540 0.16 -0.2
398,798 - 10908 mRNA_2540 0.17 0.5
398,846 - 10908 mRNA_2540 0.22 0.4
398,867 - 10908 mRNA_2540 0.24 -0.7
398,908 - 10908 mRNA_2540 0.28 0.3
398,949 - 10908 mRNA_2540 0.32 0.1
399,077 - 10908 mRNA_2540 0.45 0.2
399,265 - 10908 mRNA_2540 0.64 1.2
399,380 - 10908 mRNA_2540 0.76 0.1
399,434 + 10908 mRNA_2540 0.82 -0.1