Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2526

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354865 to 358254 10893 mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358856 to 360952 10894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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358,009 - 0.9
358,013 - 1.1
358,021 - -0.7
358,046 + 0.8
358,144 - 1.7
358,213 + 0.6
358,307 - 1.4
358,336 + 0.5
358,384 + 1.0
358,387 - -0.4
358,447 + -0.3
358,462 - 0.1
358,530 - -0.3
358,577 + 0.2
358,593 + -0.3
358,599 - 0.3
358,613 - -0.4
358,653 - 0.8
358,680 + -0.1
358,692 - 0.0
358,766 - 0.3
358,994 + 0.7
359,140 - 10894 mRNA_2526 0.14 -0.7
359,216 + 10894 mRNA_2526 0.17 -0.3
359,547 + 10894 mRNA_2526 0.33 2.4
359,648 + 10894 mRNA_2526 0.38 0.0
359,651 + 10894 mRNA_2526 0.38 0.2
359,831 + 10894 mRNA_2526 0.46 1.0
359,835 + 10894 mRNA_2526 0.47 1.2
359,900 - 10894 mRNA_2526 0.50 -0.5
359,907 - 10894 mRNA_2526 0.50 -0.5
359,907 - 10894 mRNA_2526 0.50 0.5
359,962 - 10894 mRNA_2526 0.53 -0.2
359,964 + 10894 mRNA_2526 0.53 1.0
359,996 + 10894 mRNA_2526 0.54 0.8
360,074 - 10894 mRNA_2526 0.58 1.0
360,082 - 10894 mRNA_2526 0.58 -0.1
360,176 - 10894 mRNA_2526 0.63 0.3
360,261 + 10894 mRNA_2526 0.67 0.2
360,275 - 10894 mRNA_2526 0.68 -1.7
360,379 + 10894 mRNA_2526 0.73 0.4
360,381 - 10894 mRNA_2526 0.73 1.5
361,318 - 0.3
361,587 + -0.1
361,946 + 0.5