Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2443

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145860 to 150269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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142,425 - 10810 mRNA_2442 0.80 1.5
142,500 + 10810 mRNA_2442 0.84 -0.3
142,504 - 10810 mRNA_2442 0.84 0.7
142,670 - 0.2
142,680 + 0.2
142,802 - 1.0
142,810 - -0.0
142,819 + -0.1
142,825 + 0.6
142,832 + 1.5
142,847 + -0.4
142,926 + 0.3
143,001 - -0.0
143,140 - 1.2
143,140 + -0.0
143,140 - 0.2
143,140 - -0.5
143,144 - 0.2
143,146 + 1.2
143,147 + 0.9
143,150 + 0.1
143,151 - 0.9
143,164 - 1.0
143,167 + 0.4
143,266 + -0.9
143,279 + 0.1
143,284 - -0.0
143,294 + -0.7
143,299 - -0.5
143,302 + -0.2
143,413 - 0.2
143,440 + 0.2
143,578 + 10811 mRNA_2443 0.11 0.4
143,578 + 10811 mRNA_2443 0.11 0.6
143,597 - 10811 mRNA_2443 0.12 1.0
143,755 - 10811 mRNA_2443 0.19 0.8
143,762 + 10811 mRNA_2443 0.19 1.3
143,902 - 10811 mRNA_2443 0.26 0.2
144,161 - 10811 mRNA_2443 0.38 0.6
144,322 - 10811 mRNA_2443 0.45 -0.2
144,326 - 10811 mRNA_2443 0.45 0.3
144,622 - 10811 mRNA_2443 0.59 0.2
145,043 - 10811 mRNA_2443 0.78 0.0
145,046 + 10811 mRNA_2443 0.79 1.6
145,602 - 0.8
145,618 - -0.2
145,621 - 2.4
145,623 + -0.6
145,625 - -0.1
145,625 + 1.1
145,637 - 0.1
145,639 - -0.4
145,643 - -0.2
145,652 + -0.5
145,658 - -0.9
145,669 - 0.5
145,671 - 0.6
145,678 + -0.3
145,704 + 0.6
145,792 + 0.4
145,800 - -1.0
145,821 + -0.3
145,949 + 0.6
146,110 + 0.2
146,252 - 0.7