Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2411

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2410: 10778 - Hypothetical Protein, at 59167 to 60066 10778 mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60970 to 61863 10779 mRNA_2412: 10780 - K04378 SRF serum response factor, at 62318 to 64458 10780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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60,075 - 0.7
60,303 - -0.5
60,991 + 0.5
61,017 + 1.8
61,021 + 0.6
61,180 + 10779 mRNA_2411 0.23 1.0
61,207 - 10779 mRNA_2411 0.27 0.5
61,301 - 10779 mRNA_2411 0.37 0.4
61,418 - 10779 mRNA_2411 0.50 0.2
61,458 + 10779 mRNA_2411 0.55 -0.2
61,481 + 10779 mRNA_2411 0.57 -0.4
61,589 + 10779 mRNA_2411 0.69 -0.1
61,667 + 10779 mRNA_2411 0.78 0.4
61,759 - 10779 mRNA_2411 0.88 0.0
61,768 - 10779 mRNA_2411 0.89 0.3
61,836 + 0.8
61,903 - 1.3
62,050 - 0.1
62,113 + 0.3
62,200 - 0.5
62,777 + 10780 mRNA_2412 0.21 1.5
62,808 + 10780 mRNA_2412 0.23 0.1