Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2393

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11217 to 13113 10760 mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13442 to 14834 10761 mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15133 to 16619 10762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12,577 + 10760 mRNA_2392 0.72 -1.2
12,586 - 10760 mRNA_2392 0.72 -0.4
12,645 - 10760 mRNA_2392 0.75 0.6
13,021 - 2.2
13,051 + 2.6
13,126 - 0.4
13,182 + -0.1
13,359 + 1.3
13,464 + -0.6
13,491 - 0.2
13,615 + 10761 mRNA_2393 0.12 0.8
13,619 - 10761 mRNA_2393 0.13 -0.3
13,623 + 10761 mRNA_2393 0.13 -0.2
13,740 + 10761 mRNA_2393 0.21 0.2
13,761 + 10761 mRNA_2393 0.23 0.4
13,834 + 10761 mRNA_2393 0.28 1.1
14,032 - 10761 mRNA_2393 0.42 -0.1
14,088 - 10761 mRNA_2393 0.46 -0.7
14,088 - 10761 mRNA_2393 0.46 0.2
14,125 + 10761 mRNA_2393 0.49 -1.1
14,180 + 10761 mRNA_2393 0.53 1.9
14,223 - 10761 mRNA_2393 0.56 -0.4
14,225 + 10761 mRNA_2393 0.56 1.4
14,240 + 10761 mRNA_2393 0.57 0.8
14,312 + 10761 mRNA_2393 0.62 0.5
14,356 - 10761 mRNA_2393 0.66 -0.0
14,379 + 10761 mRNA_2393 0.67 0.7
14,419 + 10761 mRNA_2393 0.70 -0.1
14,474 + 10761 mRNA_2393 0.74 -0.7
14,501 - 10761 mRNA_2393 0.76 1.1
14,544 + 10761 mRNA_2393 0.79 -1.2
14,635 - 10761 mRNA_2393 0.86 0.0
14,764 - 0.8
14,793 - -0.0
14,960 + -0.6
15,084 - 0.8
15,256 + 0.5
15,266 - 2.0
15,407 + 10762 mRNA_2394 0.18 0.6
15,413 + 10762 mRNA_2394 0.19 0.1
15,430 - 10762 mRNA_2394 0.20 -0.3
15,658 + 10762 mRNA_2394 0.35 1.4
15,669 + 10762 mRNA_2394 0.36 -0.4
15,700 - 10762 mRNA_2394 0.38 1.6
15,702 - 10762 mRNA_2394 0.38 0.5
15,704 + 10762 mRNA_2394 0.38 0.2
15,709 + 10762 mRNA_2394 0.39 1.0