Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2271

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492259 to 494809 10638 mRNA_2271: 10639 - Hypothetical Protein, at 494808 to 495275 10639 mRNA_2272: 10640 - Hypothetical Protein, at 495737 to 495928 10640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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493,824 - 10638 mRNA_2270 0.61 0.9
493,965 + 10638 mRNA_2270 0.67 0.7
493,981 - 10638 mRNA_2270 0.68 1.0
494,113 + 10638 mRNA_2270 0.73 -0.4
494,375 - 10638 mRNA_2270 0.83 1.0
494,381 - 10638 mRNA_2270 0.83 1.2
494,435 - 10638 mRNA_2270 0.85 0.5
494,456 + 10638 mRNA_2270 0.86 0.1
494,549 - 10638 mRNA_2270 0.90 0.3
494,698 - -1.1
494,708 + -0.4
494,713 + 0.4
494,848 + 0.7
494,855 - 10639 mRNA_2271 0.10 0.1
494,855 - 10639 mRNA_2271 0.10 -0.2
494,857 + 10639 mRNA_2271 0.10 0.0
494,858 + 10639 mRNA_2271 0.11 1.0
494,880 - 10639 mRNA_2271 0.15 -0.8
494,906 - 10639 mRNA_2271 0.21 1.4
494,986 + 10639 mRNA_2271 0.38 -0.2
495,001 + 10639 mRNA_2271 0.41 -0.1
495,006 + 10639 mRNA_2271 0.42 0.4
495,007 - 10639 mRNA_2271 0.43 -0.1
495,033 - 10639 mRNA_2271 0.48 0.8
495,044 + 10639 mRNA_2271 0.50 1.7
495,155 - 10639 mRNA_2271 0.74 0.3
495,160 - 10639 mRNA_2271 0.75 -0.4
496,054 - -0.1
496,056 - 0.3