Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2254

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2253: 10621 - HMMPfam-Staphylococcal nuclease homologue-PF00565,ProSiteProfiles-Thermonuclease domain profile.-PS50830,SMART-Staphylococcal nuclease homologues-SM00318,SUPERFAMILY--SSF50199, at 468849 to 469968 10621 mRNA_2254: 10622 - K17822 DCUN1D1_2 DCN1-like protein 1/2, at 470196 to 471391 10622 mRNA_2255: 10623 - Hypothetical Protein, at 471819 to 472358 10623

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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469,363 - 10621 mRNA_2253 0.46 0.3
469,372 + 10621 mRNA_2253 0.47 -0.5
469,498 + 10621 mRNA_2253 0.58 -0.1
469,781 - 10621 mRNA_2253 0.83 0.3
469,791 - 10621 mRNA_2253 0.84 0.0
469,822 - 10621 mRNA_2253 0.87 0.5
469,829 - 10621 mRNA_2253 0.88 0.3
469,957 - 1.2
469,964 - 0.6
469,973 + 0.7
469,980 - 0.1
470,118 + 0.1
470,122 + 1.0
470,233 + 1.9
470,510 + 10622 mRNA_2254 0.26 0.9
470,547 + 10622 mRNA_2254 0.29 0.3
470,552 + 10622 mRNA_2254 0.30 1.8
470,562 - 10622 mRNA_2254 0.31 0.4
470,673 + 10622 mRNA_2254 0.40 0.1
471,146 + 10622 mRNA_2254 0.79 -0.7
471,417 - 0.5
471,688 - -0.4
472,305 - -0.9
472,309 - 0.6