Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2241

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440002 to 443977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448063 to 449685 10610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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443,538 - 10608 mRNA_2240 0.89 -0.2
443,567 - 10608 mRNA_2240 0.90 -0.1
443,681 - 0.2
443,903 + 0.8
443,951 - 0.4
443,974 - -0.0
443,981 - 0.5
443,981 + -0.1
443,984 + 0.6
444,274 + 0.3
444,296 - 1.1
444,448 + 0.0
444,459 - 2.0
444,466 + 1.5
445,831 - 10609 mRNA_2241 0.44 0.6
445,945 - 10609 mRNA_2241 0.47 0.8
446,035 + 10609 mRNA_2241 0.50 0.8
446,081 - 10609 mRNA_2241 0.52 -0.9
446,211 - 10609 mRNA_2241 0.56 0.5
446,249 - 10609 mRNA_2241 0.57 1.4
446,829 + 10609 mRNA_2241 0.75 0.6
447,221 - 10609 mRNA_2241 0.88 0.2
447,245 - 10609 mRNA_2241 0.89 0.1
447,345 - 1.1
447,532 - 1.1
447,548 - 0.2
447,585 + -0.2
447,666 + -0.1
447,666 + -0.5
447,667 - 0.6
447,669 + -0.1
447,671 - 0.5
447,683 - -0.1
447,689 - 0.5
447,800 + 0.6
447,808 + 1.1
447,811 - 0.6
447,840 - 0.3
447,884 + 0.3
447,892 + 0.3
447,928 + 0.2
448,015 - 0.4
448,031 - -0.0
448,043 - -0.2
448,044 + 0.5
448,044 - 0.1
448,053 - -0.2
448,073 + 0.1
448,183 + 1.2
448,184 + 0.2
448,210 + 0.2
448,217 + 0.6
448,240 - 10610 mRNA_2242 0.11 1.5
448,247 - 10610 mRNA_2242 0.11 0.6
448,329 - 10610 mRNA_2242 0.16 0.6
448,335 + 10610 mRNA_2242 0.17 0.1
448,339 - 10610 mRNA_2242 0.17 0.1
448,353 + 10610 mRNA_2242 0.18 0.2
448,353 + 10610 mRNA_2242 0.18 0.3
448,358 - 10610 mRNA_2242 0.18 1.7
448,364 - 10610 mRNA_2242 0.19 0.1
448,384 + 10610 mRNA_2242 0.20 0.4
448,403 - 10610 mRNA_2242 0.21 0.5
448,446 + 10610 mRNA_2242 0.24 0.3
448,478 + 10610 mRNA_2242 0.26 -1.1
448,483 - 10610 mRNA_2242 0.26 0.1
448,494 + 10610 mRNA_2242 0.27 0.3
448,497 - 10610 mRNA_2242 0.27 0.3
448,502 + 10610 mRNA_2242 0.27 -0.3
448,507 + 10610 mRNA_2242 0.27 1.1