Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2224

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2223: 10591 - Hypothetical Protein, at 398551 to 400277 10591 mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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399,666 - 10591 mRNA_2223 0.65 1.2
399,668 + 10591 mRNA_2223 0.65 0.5
399,677 + 10591 mRNA_2223 0.65 -0.8
399,709 - 10591 mRNA_2223 0.67 0.2
399,818 - 10591 mRNA_2223 0.73 -0.9
399,946 - 10591 mRNA_2223 0.81 -0.0
400,269 - 0.9
400,418 + 0.3
400,568 + -1.4
400,741 - 1.0
400,819 + 0.4
400,863 + 10592 mRNA_2224 0.11 0.3
400,958 - 10592 mRNA_2224 0.14 0.4
400,973 + 10592 mRNA_2224 0.14 0.3
400,986 + 10592 mRNA_2224 0.15 0.7
401,003 - 10592 mRNA_2224 0.16 0.5
401,125 - 10592 mRNA_2224 0.20 0.7
401,137 + 10592 mRNA_2224 0.20 0.3
401,141 - 10592 mRNA_2224 0.20 1.7
401,141 - 10592 mRNA_2224 0.20 -0.3
401,209 - 10592 mRNA_2224 0.23 0.5
401,289 + 10592 mRNA_2224 0.26 -0.0
401,290 + 10592 mRNA_2224 0.26 1.9
401,293 + 10592 mRNA_2224 0.26 -0.1
401,303 + 10592 mRNA_2224 0.26 -0.4
401,437 - 10592 mRNA_2224 0.31 -0.7
401,464 - 10592 mRNA_2224 0.32 0.3
401,587 - 10592 mRNA_2224 0.36 -0.5
401,612 + 10592 mRNA_2224 0.37 2.0
401,884 + 10592 mRNA_2224 0.47 0.3
402,216 + 10592 mRNA_2224 0.59 0.7
402,425 + 10592 mRNA_2224 0.66 0.3
402,591 + 10592 mRNA_2224 0.72 0.9
402,855 - 10592 mRNA_2224 0.82 -0.5
403,168 + -0.4
403,550 - 0.3
403,574 - -0.4
403,613 - -1.1
403,709 + 0.0
403,735 + 0.3
403,736 + 0.5
403,740 + 0.6
403,743 - -1.1
403,746 + -0.3
403,753 + 0.3
403,780 - 1.0
403,843 - 0.0
403,870 + 1.1
403,870 - 0.7
403,873 - -0.1
403,876 - 0.1
403,880 - 0.0
403,900 + 1.4
403,906 + 0.8
403,908 + 1.6
403,909 + 1.0
403,911 + -0.3
403,920 - 0.7
403,922 - 0.0
403,925 + 1.0
404,054 + 0.3
404,075 - 10593 mRNA_2225 0.11 0.1
404,088 + 10593 mRNA_2225 0.12 0.7
404,093 + 10593 mRNA_2225 0.13 0.6
404,197 - 10593 mRNA_2225 0.24 0.3
404,221 + 10593 mRNA_2225 0.27 -0.1
404,223 - 10593 mRNA_2225 0.27 -0.2
404,223 - 10593 mRNA_2225 0.27 -0.4
404,339 - 10593 mRNA_2225 0.39 0.2