Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2208

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353107 to 355052 10575 mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355291 to 358512 10576 mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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354,382 - 10575 mRNA_2207 0.66 -0.9
354,656 - 10575 mRNA_2207 0.80 0.3
354,681 - 10575 mRNA_2207 0.81 0.2
354,919 - -0.5
354,950 - 1.0
355,085 + -0.4
355,199 + 0.2
355,215 - 0.2
355,429 - 0.8
355,655 - 10576 mRNA_2208 0.11 -0.7
355,946 - 10576 mRNA_2208 0.20 0.5
356,007 + 10576 mRNA_2208 0.22 -0.7
356,109 + 10576 mRNA_2208 0.25 0.1
356,112 + 10576 mRNA_2208 0.25 -0.5
356,422 + 10576 mRNA_2208 0.35 1.0
356,832 + 10576 mRNA_2208 0.48 -0.1
356,999 + 10576 mRNA_2208 0.53 1.1
357,222 - 10576 mRNA_2208 0.60 -0.4
357,454 + 10576 mRNA_2208 0.67 0.1
357,558 + 10576 mRNA_2208 0.70 -0.1
358,177 + 10576 mRNA_2208 0.90 0.2
358,265 + 0.5
358,463 + -1.1
358,508 - 0.3
358,584 + 0.1
358,718 - 1.5
358,889 + 0.1
358,895 - -0.9
358,915 + -1.5
358,942 - -0.7
359,064 + 0.3
359,164 - 1.0
359,195 + 0.0
359,240 + 2.6
359,312 - -0.3