Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2170

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2169: 10537 - Hypothetical Protein, at 239219 to 240668 10537 mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240753 to 243794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244214 to 249218 10539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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239,844 + 10537 mRNA_2169 0.43 1.3
239,905 - 10537 mRNA_2169 0.47 1.6
240,128 + 10537 mRNA_2169 0.63 -0.0
240,181 - 10537 mRNA_2169 0.66 -0.2
240,277 - 10537 mRNA_2169 0.73 0.8
240,336 - 10537 mRNA_2169 0.77 -0.5
240,438 - 10537 mRNA_2169 0.84 -0.4
240,602 + -0.1
240,823 - -0.2
240,909 + 0.7
240,914 + 0.2
241,049 + -0.3
241,314 + 10538 mRNA_2170 0.18 -0.1
241,632 - 10538 mRNA_2170 0.29 -0.1
241,657 + 10538 mRNA_2170 0.30 -0.1
241,776 + 10538 mRNA_2170 0.34 -0.1
241,777 - 10538 mRNA_2170 0.34 -0.1
242,348 - 10538 mRNA_2170 0.52 -0.3
242,386 - 10538 mRNA_2170 0.54 0.0
242,556 + 10538 mRNA_2170 0.59 0.3
242,568 + 10538 mRNA_2170 0.60 -0.1
242,807 + 10538 mRNA_2170 0.68 2.0
242,984 - 10538 mRNA_2170 0.73 0.1
243,112 + 10538 mRNA_2170 0.78 0.5
243,260 - 10538 mRNA_2170 0.82 0.1
243,889 + 1.1
244,018 - -0.7
244,023 - 0.2
244,023 + 1.3
244,162 + -0.1
244,163 - 1.9
244,163 - 0.1
244,182 - 1.2
244,188 + 0.4
244,272 + -0.2
244,455 - 0.5
244,489 + 0.4
244,624 - 0.4
244,626 + 1.2