Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2137

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707 10504 mRNA_2137: 10505 - Hypothetical Protein, at 155364 to 157707 10505 mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157835 to 161101 10506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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154,391 - 10504 mRNA_2136 0.81 0.6
154,446 - 10504 mRNA_2136 0.84 1.1
154,688 - 0.8
154,839 - 0.4
155,435 + 1.9
155,436 - -0.0
155,442 + -0.2
155,451 - -0.2
155,562 - 0.0
155,717 + 10505 mRNA_2137 0.15 0.7
155,975 + 10505 mRNA_2137 0.26 0.7
156,185 + 10505 mRNA_2137 0.35 0.1
156,307 + 10505 mRNA_2137 0.40 -0.5
156,330 - 10505 mRNA_2137 0.41 1.4
156,485 - 10505 mRNA_2137 0.48 1.4
156,821 - 10505 mRNA_2137 0.62 -0.0
156,977 + 10505 mRNA_2137 0.69 0.2
157,248 + 10505 mRNA_2137 0.80 -0.2
157,542 + -0.0
157,816 + 0.4
157,830 - -0.1
157,835 - 0.6
157,960 - 1.2
158,134 + 1.3
158,137 + 0.3
158,156 - 0.1
158,446 + 10506 mRNA_2138 0.19 0.2
158,534 - 10506 mRNA_2138 0.21 0.8
158,604 + 10506 mRNA_2138 0.24 0.2
158,626 + 10506 mRNA_2138 0.24 1.4