Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2120

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117592 to 119082 10487 mRNA_2120: 10488 - Hypothetical Protein, at 119780 to 121101 10488 mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121585 to 123428 10489

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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118,836 - 10487 mRNA_2119 0.83 0.4
118,938 - 1.1
119,571 + 0.5
120,046 + 10488 mRNA_2120 0.20 -0.8
120,363 + 10488 mRNA_2120 0.44 1.0
120,475 + 10488 mRNA_2120 0.53 -0.2
120,484 - 10488 mRNA_2120 0.53 0.5
120,484 + 10488 mRNA_2120 0.53 1.2
120,497 + 10488 mRNA_2120 0.54 0.5
120,514 - 10488 mRNA_2120 0.56 2.3
120,636 - 10488 mRNA_2120 0.65 -0.1
120,766 + 10488 mRNA_2120 0.75 0.3
120,781 - 10488 mRNA_2120 0.76 -0.1
120,785 - 10488 mRNA_2120 0.76 0.5
120,786 + 10488 mRNA_2120 0.76 0.3
120,790 + 10488 mRNA_2120 0.76 0.6
120,795 - 10488 mRNA_2120 0.77 0.5
120,798 - 10488 mRNA_2120 0.77 -0.0
120,798 + 10488 mRNA_2120 0.77 0.3
120,799 - 10488 mRNA_2120 0.77 0.2
120,799 - 10488 mRNA_2120 0.77 -1.1
120,803 + 10488 mRNA_2120 0.77 -0.3
120,805 - 10488 mRNA_2120 0.78 -0.1
120,806 + 10488 mRNA_2120 0.78 0.3
120,807 - 10488 mRNA_2120 0.78 1.2
120,808 + 10488 mRNA_2120 0.78 1.9
120,810 + 10488 mRNA_2120 0.78 1.3
121,088 + 1.2
121,091 + 1.0
121,202 + 1.3
121,231 - 0.1
121,238 + 0.1
121,263 + 0.9
121,354 + 1.5
121,555 - -0.8
121,676 + 1.0
121,686 + 0.9
121,708 - -0.0
121,714 - -1.3
121,835 - 10489 mRNA_2121 0.14 0.4
121,982 + 10489 mRNA_2121 0.22 0.3