Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2089

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456 mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457 mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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44,473 - 10456 mRNA_2088 0.47 -1.4
44,507 + 10456 mRNA_2088 0.49 -0.0
44,802 + 10456 mRNA_2088 0.72 1.3
44,818 - 10456 mRNA_2088 0.74 -0.4
44,901 - 10456 mRNA_2088 0.80 0.1
44,914 - 10456 mRNA_2088 0.81 1.3
44,934 - 10456 mRNA_2088 0.83 0.3
45,139 + 0.8
45,258 + -0.7
45,335 + -0.1
45,387 - -0.7
45,825 + 10457 mRNA_2089 0.18 0.2
45,956 + 10457 mRNA_2089 0.23 0.1
46,101 - 10457 mRNA_2089 0.29 -0.5
46,491 - 10457 mRNA_2089 0.44 -1.3
46,656 - 10457 mRNA_2089 0.50 0.8
46,679 - 10457 mRNA_2089 0.51 -0.3
46,768 - 10457 mRNA_2089 0.55 0.7
46,950 - 10457 mRNA_2089 0.62 -0.6
47,449 - 10457 mRNA_2089 0.81 -0.1
47,683 - 0.6
47,847 + -0.3
48,118 - -0.8
48,127 - 0.3
48,127 + 0.6
48,133 - 1.5
48,133 - 1.0
48,163 - 0.0
48,165 - -0.1
48,172 + -0.4
48,183 - 0.5
48,234 + 0.8
48,265 + 0.1
48,461 + 10458 mRNA_2090 0.20 1.0
48,474 + 10458 mRNA_2090 0.21 -0.7
48,648 - 10458 mRNA_2090 0.38 -0.5