Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2087

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2086: 10454 - Hypothetical Protein, at 40220 to 41311 10454 mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41484 to 43178 10455 mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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40,695 + 10454 mRNA_2086 0.43 -0.2
40,700 - 10454 mRNA_2086 0.44 1.2
40,718 - 10454 mRNA_2086 0.46 -0.2
40,718 + 10454 mRNA_2086 0.46 0.1
40,810 + 10454 mRNA_2086 0.54 0.2
40,839 + 10454 mRNA_2086 0.57 0.3
40,840 + 10454 mRNA_2086 0.57 -1.2
40,844 - 10454 mRNA_2086 0.57 0.4
40,853 - 10454 mRNA_2086 0.58 0.6
40,997 + 10454 mRNA_2086 0.71 0.1
40,999 + 10454 mRNA_2086 0.71 0.5
41,003 - 10454 mRNA_2086 0.72 0.7
41,014 - 10454 mRNA_2086 0.73 -0.4
41,041 + 10454 mRNA_2086 0.75 -0.2
41,045 - 10454 mRNA_2086 0.76 -0.4
41,055 - 10454 mRNA_2086 0.76 0.8
41,136 - 10454 mRNA_2086 0.84 0.5
41,145 - 10454 mRNA_2086 0.85 -0.8
41,173 + 10454 mRNA_2086 0.87 0.1
41,360 - 0.9
42,170 + 10455 mRNA_2087 0.40 0.0
42,748 - 10455 mRNA_2087 0.75 -0.2
42,748 - 10455 mRNA_2087 0.75 1.6
42,815 - 10455 mRNA_2087 0.79 0.1
42,857 + 10455 mRNA_2087 0.81 0.8
43,191 + 2.1
43,353 - 0.5
43,451 - 1.2
43,484 - 0.2
43,487 - 1.6
43,489 + 0.7
43,494 + -0.1
43,498 + -0.2
43,566 - 0.2
43,590 - 0.5
43,602 - -0.2
43,639 - 1.1
43,744 - 0.8
43,752 + 0.0
43,770 + 1.5
43,770 + 1.1
43,770 + -0.5
43,787 + -0.6
43,796 + 1.5
43,898 - -0.5
43,916 - 0.1
43,941 + 0.3
44,014 - 10456 mRNA_2088 0.11 0.3