Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2060

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853881 to 854956 10427 mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855890 to 857453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857800 to 859276 10429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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855,054 - -0.8
855,056 + -0.2
855,205 + 0.8
855,465 - -0.0
855,468 + 0.3
855,469 + 0.0
855,639 + -1.7
855,644 - 0.6
855,651 + -0.5
855,754 + 0.7
855,911 - 1.5
855,954 - 1.0
856,079 + 10428 mRNA_2060 0.12 1.4
856,736 - 10428 mRNA_2060 0.54 0.2
856,753 - 10428 mRNA_2060 0.55 0.0
857,044 + 10428 mRNA_2060 0.74 0.1
857,100 - 10428 mRNA_2060 0.77 2.6
857,125 - 10428 mRNA_2060 0.79 0.1
857,222 + 10428 mRNA_2060 0.85 -0.1
857,368 - 0.4
857,393 - 2.0
857,528 - -0.3
857,667 - 0.5
857,813 - 0.5
857,815 + 1.0
857,831 + 0.5
858,388 + 10429 mRNA_2061 0.40 0.4