Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2055

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844662 to 846096 10422 mRNA_2055: 10423 - KOG2817 Predicted E3 ubiquitin ligase, at 846243 to 848116 10423 mRNA_2056: 10424 - K11667 INO80C, IES6 INO80 complex subunit C, at 848164 to 849134 10424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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845,735 - 10422 mRNA_2054 0.75 1.3
845,780 - 10422 mRNA_2054 0.78 1.4
845,825 - 10422 mRNA_2054 0.81 0.5
845,846 - 10422 mRNA_2054 0.83 -0.5
845,914 + 10422 mRNA_2054 0.87 -0.0
846,030 - -1.5
846,080 - 0.6
846,084 + 0.7
846,190 - 0.3
846,275 + 0.8
846,368 - 0.3
846,545 - 10423 mRNA_2055 0.16 0.6
846,545 + 10423 mRNA_2055 0.16 -1.6
846,672 + 10423 mRNA_2055 0.23 -0.4
846,935 - 10423 mRNA_2055 0.37 1.6
846,940 + 10423 mRNA_2055 0.37 0.2
847,299 - 10423 mRNA_2055 0.56 1.2
847,522 - 10423 mRNA_2055 0.68 0.7
847,670 + 10423 mRNA_2055 0.76 -0.1
847,821 - 10423 mRNA_2055 0.84 0.4
847,966 - 0.2
848,139 + 0.1
848,144 - -0.2
848,556 + 10424 mRNA_2056 0.40 -0.6
848,706 + 10424 mRNA_2056 0.56 -0.2