Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2053

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421 mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844662 to 846096 10422

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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841,042 + 10420 mRNA_2052 0.77 0.8
841,219 - 10420 mRNA_2052 0.83 1.8
841,221 + 10420 mRNA_2052 0.83 1.2
841,411 - 10420 mRNA_2052 0.89 0.4
841,483 + -0.8
841,751 + -0.1
841,808 - -0.3
841,949 + 0.5
841,971 - -1.5
842,060 - 0.3
842,112 + 0.3
842,120 - 0.5
842,257 - -0.8
842,523 - 10421 mRNA_2053 0.21 0.6
842,523 - 10421 mRNA_2053 0.21 1.5
842,669 - 10421 mRNA_2053 0.27 -0.4
842,725 - 10421 mRNA_2053 0.29 -0.1
842,786 - 10421 mRNA_2053 0.31 0.9
842,808 - 10421 mRNA_2053 0.32 0.8
842,944 - 10421 mRNA_2053 0.38 -0.1
842,954 - 10421 mRNA_2053 0.38 1.0
842,968 - 10421 mRNA_2053 0.39 -0.7
843,186 + 10421 mRNA_2053 0.48 -1.2
843,232 + 10421 mRNA_2053 0.50 0.5
843,253 + 10421 mRNA_2053 0.50 0.8
843,268 + 10421 mRNA_2053 0.51 0.2
843,372 - 10421 mRNA_2053 0.55 1.0
843,389 - 10421 mRNA_2053 0.56 -0.3
843,442 + 10421 mRNA_2053 0.58 0.2
843,500 + 10421 mRNA_2053 0.60 1.2
843,551 - 10421 mRNA_2053 0.63 -0.2
843,602 + 10421 mRNA_2053 0.65 0.1
843,628 - 10421 mRNA_2053 0.66 0.5
843,684 + 10421 mRNA_2053 0.68 -0.2
843,718 - 10421 mRNA_2053 0.69 0.3
843,831 - 10421 mRNA_2053 0.74 -0.8
843,880 - 10421 mRNA_2053 0.76 0.8
843,892 + 10421 mRNA_2053 0.76 0.1
843,970 + 10421 mRNA_2053 0.80 0.8
843,995 + 10421 mRNA_2053 0.81 0.1
843,997 - 10421 mRNA_2053 0.81 1.3
844,178 + 10421 mRNA_2053 0.88 -0.8
844,335 - 0.1
844,411 - 0.1
844,427 + 0.4
844,585 - 0.7
844,585 - -0.4
844,594 + -0.3
844,733 - 0.1
844,737 - 1.9
844,774 + -0.6
844,794 + 1.1
844,855 + 10422 mRNA_2054 0.13 -0.0
844,990 + 10422 mRNA_2054 0.23 -0.1
845,190 + 10422 mRNA_2054 0.37 0.3