Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1991

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684324 to 686633 10358 mRNA_1991: 10359 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 687558 to 690393 10359 mRNA_1992: 10360 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 690779 to 693096 10360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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686,704 - -0.6
686,833 + -0.6
686,844 + 0.2
686,848 + 1.2
686,882 + 0.6
686,909 - 0.5
686,992 + -0.3
686,992 - 0.1
687,019 - 1.4
687,043 - 0.5
687,047 + -0.3
687,052 + 0.6
687,057 + 0.2
687,063 + -1.2
687,064 - 0.6
687,065 + 0.8
687,119 + 1.5
687,122 + -0.1
687,129 - -0.3
687,129 - 0.3
687,132 - -0.0
687,136 + 1.5
687,138 + 1.3
687,146 - 0.4
687,146 - -0.2
687,166 + 0.2
687,173 + -0.2
687,201 + 0.5
687,348 - -0.2
687,349 + 0.1
687,483 + 0.3
687,658 - 0.2
687,750 - 0.3
687,924 - 10359 mRNA_1991 0.13 -0.2
688,217 + 10359 mRNA_1991 0.23 0.5
688,240 + 10359 mRNA_1991 0.24 -0.7
688,375 + 10359 mRNA_1991 0.29 -0.7
688,557 + 10359 mRNA_1991 0.35 0.6
688,666 - 10359 mRNA_1991 0.39 -0.2
688,672 + 10359 mRNA_1991 0.39 -0.1
688,685 - 10359 mRNA_1991 0.40 1.3
688,959 - 10359 mRNA_1991 0.49 -0.1
689,164 - 10359 mRNA_1991 0.57 -0.0
689,270 + 10359 mRNA_1991 0.60 0.8
689,770 - 10359 mRNA_1991 0.78 0.8
690,693 + -0.7
690,715 + -0.1
691,023 - 10360 mRNA_1992 0.11 0.6
691,255 - 10360 mRNA_1992 0.21 -0.2