Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1947

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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576,687 + 10314 mRNA_1946 0.80 -0.5
576,826 - 10314 mRNA_1946 0.87 -0.0
576,969 + -0.1
576,995 + 0.1
577,010 + -1.8
577,038 - 0.2
577,122 - -0.1
577,176 + 0.6
577,437 + 0.2
577,444 + 0.0
577,548 - 10315 mRNA_1947 0.15 -0.5
577,836 - 10315 mRNA_1947 0.37 0.8
577,838 + 10315 mRNA_1947 0.37 -0.0
577,851 - 10315 mRNA_1947 0.38 2.3
577,987 - 10315 mRNA_1947 0.48 0.7
578,429 - 10315 mRNA_1947 0.81 0.3
578,583 + 0.5
578,731 + -0.0
578,747 + 0.5
578,751 + 0.1
578,760 - 0.3
578,780 + 0.9
578,903 - -0.1
579,117 - -0.2
579,452 - 0.8
579,452 - 1.4
579,482 + -0.1
579,539 - 0.7
579,593 + 0.7
579,609 + -0.0
579,661 + 1.0