Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1925

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521294 to 523495 10292 mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523662 to 525143 10293 mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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522,744 + 10292 mRNA_1924 0.66 0.0
523,142 - 10292 mRNA_1924 0.84 0.5
523,148 + 10292 mRNA_1924 0.84 1.0
523,304 + 0.3
523,423 + -0.8
523,585 - 0.2
523,935 + 10293 mRNA_1925 0.18 0.4
524,175 + 10293 mRNA_1925 0.35 0.5
524,320 - 10293 mRNA_1925 0.44 0.7
524,589 + 10293 mRNA_1925 0.63 0.2
524,806 + 10293 mRNA_1925 0.77 0.3
524,885 - 10293 mRNA_1925 0.83 -0.2
525,056 - -1.7
525,189 - -0.0
525,191 + 0.2
525,205 + -0.2
525,209 - 0.4
525,217 - 0.7
525,218 - 1.1
525,219 - 0.0
525,222 - 0.5
525,227 + 0.7
525,230 - -0.5
525,232 + 1.1
525,245 - 0.1
525,245 + 0.5
525,256 + 0.3
525,260 + 0.1
525,266 + 0.0
525,267 + 0.4
525,272 + -0.9
525,272 - -0.5
525,280 - -0.4
525,297 + -0.3
525,298 - -0.0
525,322 + 0.8
525,414 + -0.4
525,871 - 10294 mRNA_1926 0.21 0.3