Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1900

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462869 to 464416 10267 mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464695 to 468117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468442 to 470059 10269

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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463,748 - 10267 mRNA_1899 0.57 1.4
463,748 - 10267 mRNA_1899 0.57 0.3
464,132 - 10267 mRNA_1899 0.82 0.2
464,274 - -0.4
464,583 + 0.9
464,940 - 0.2
464,984 - 1.6
465,036 + 0.1
465,347 + 10268 mRNA_1900 0.19 1.8
465,455 - 10268 mRNA_1900 0.22 -1.4
465,753 + 10268 mRNA_1900 0.31 -0.5
466,444 + 10268 mRNA_1900 0.51 0.7
467,341 - 10268 mRNA_1900 0.77 -0.4
467,464 + 10268 mRNA_1900 0.81 0.7
467,570 + 10268 mRNA_1900 0.84 0.8
467,590 + 10268 mRNA_1900 0.85 0.2
467,733 - 10268 mRNA_1900 0.89 0.2
468,105 - 1.0
468,209 + -1.3
468,247 - 0.2
468,373 - 0.2
468,375 + 0.1
468,382 + 0.1
468,383 - 0.3