Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1895

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450582 to 452258 10262 mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452374 to 455740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456239 to 458071 10264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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451,387 + 10262 mRNA_1894 0.48 -0.9
451,550 + 10262 mRNA_1894 0.58 -0.4
451,556 - 10262 mRNA_1894 0.58 -1.1
451,662 + 10262 mRNA_1894 0.64 0.2
451,834 + 10262 mRNA_1894 0.75 0.2
452,384 + -0.1
452,396 - 1.0
452,559 + 2.6
453,103 - 10263 mRNA_1895 0.22 1.2
453,174 + 10263 mRNA_1895 0.24 0.8
453,401 - 10263 mRNA_1895 0.31 0.6
453,700 + 10263 mRNA_1895 0.39 0.8
453,719 + 10263 mRNA_1895 0.40 0.5
453,849 - 10263 mRNA_1895 0.44 0.2
453,856 + 10263 mRNA_1895 0.44 -0.5
453,867 + 10263 mRNA_1895 0.44 0.2
453,911 + 10263 mRNA_1895 0.46 0.2
453,925 + 10263 mRNA_1895 0.46 0.1
454,020 + 10263 mRNA_1895 0.49 -0.2
454,183 + 10263 mRNA_1895 0.54 1.8
454,437 - 10263 mRNA_1895 0.61 0.5
455,094 - 10263 mRNA_1895 0.81 -0.1
455,191 - 10263 mRNA_1895 0.84 0.8
455,244 - 10263 mRNA_1895 0.85 1.0
455,321 - 10263 mRNA_1895 0.88 0.7
455,622 - 0.4
455,627 + 0.5
455,637 + -0.1
455,645 + -0.6
455,656 + 1.0
455,776 - 0.9
455,798 - -0.2
455,824 + -0.1
455,922 - 0.6
455,934 - 0.0
455,950 - -0.1
455,955 + -1.0
455,955 + 0.2
455,957 + 0.1
455,963 + 0.0
455,968 + 1.6
455,968 + 0.9
455,970 - 0.3
456,078 - 0.3
456,098 - -0.1
456,102 - -1.2
456,122 + 0.5
456,226 - -1.5
456,243 + -3.6
456,264 - -1.8
456,393 - -1.2
456,408 - -0.3
456,524 + 10264 mRNA_1896 0.16 -2.0
456,533 - 10264 mRNA_1896 0.16 -2.0
456,538 - 10264 mRNA_1896 0.16 -1.6
456,546 + 10264 mRNA_1896 0.17 -1.9
456,549 + 10264 mRNA_1896 0.17 -2.4
456,550 + 10264 mRNA_1896 0.17 -1.2
456,558 + 10264 mRNA_1896 0.17 -1.9
456,564 + 10264 mRNA_1896 0.18 -1.1
456,583 - 10264 mRNA_1896 0.19 -3.3