Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1848

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216 mRNA_1849: 10217 - Hypothetical Protein, at 365239 to 367490 10217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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362,009 - 10215 mRNA_1847 0.85 0.2
362,329 + 0.8
362,352 - 1.1
362,382 - -1.0
362,404 - 0.6
362,488 - -0.2
362,489 - 0.4
362,509 - 0.2
362,516 + 0.8
362,518 - 1.0
362,519 - 0.3
362,527 + 0.4
362,538 - 0.3
362,541 + 1.0
362,545 + -0.3
362,545 + 0.4
362,555 + 1.5
362,557 + 0.5
362,559 + -0.1
362,560 - 1.1
362,564 - 1.1
362,567 - 0.5
362,571 - -0.0
362,571 + -0.2
362,584 - 0.4
362,589 + -0.1
362,605 - 0.7
362,628 - 0.4
362,639 - 0.5
362,640 + -1.1
362,641 + 0.2
362,643 + 0.4
362,644 + -0.1
362,647 - 2.0
362,676 - 0.7
362,676 + 0.1
362,689 - -0.7
362,692 + 0.6
362,693 + 1.4
362,698 - 0.5
362,698 - 1.0
362,702 - 1.0
362,708 + -0.0
362,717 - 0.4
362,717 + 0.4
362,721 - 0.5
362,726 - 0.3
362,731 - 0.0
362,732 + 0.2
362,735 - 0.4
362,750 + -0.1
362,751 + 0.7
362,752 + 0.2
362,753 + -0.1
362,753 + 2.2
362,758 - 1.3
362,764 - 0.7
362,766 - -1.1
362,775 + 0.1
362,775 - 0.8
362,776 + -0.4
362,778 + -0.3
362,789 + 1.1
362,797 - 0.6
362,801 + -0.4
362,803 + -0.1
362,812 + -0.1
362,813 + -0.1
362,911 + 0.1
362,912 - 1.1
362,945 - -0.2
362,949 - -1.0
363,058 + -0.1
363,086 - -0.3
363,093 + -0.0
363,097 - -1.7
363,230 - 10216 mRNA_1848 0.14 0.2
363,257 + 10216 mRNA_1848 0.15 0.1
363,374 + 10216 mRNA_1848 0.21 1.2
363,587 - 10216 mRNA_1848 0.31 0.6
363,802 + 10216 mRNA_1848 0.42 0.5
363,960 - 10216 mRNA_1848 0.50 -0.3
364,241 - 10216 mRNA_1848 0.63 0.6
364,403 - 10216 mRNA_1848 0.71 1.0
364,535 + 10216 mRNA_1848 0.78 2.1
364,576 + 10216 mRNA_1848 0.80 0.6
364,707 + 10216 mRNA_1848 0.86 -0.2
364,868 - 0.8
364,878 + 0.1
365,167 + 1.7
365,610 + 10217 mRNA_1849 0.16 1.1
365,819 - 10217 mRNA_1849 0.26 -1.1
365,855 + 10217 mRNA_1849 0.27 0.4