Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1837

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329163 to 331495 10204 mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331991 to 335971 10205 mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336405 to 337627 10206

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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331,610 + 1.7
331,748 - 0.5
331,855 + -0.2
331,862 - 0.8
331,868 - 0.9
331,878 + 0.5
331,903 + -1.2
331,988 - 1.4
332,007 - -0.3
332,013 - 0.4
332,014 - -0.3
332,014 + 0.4
332,014 + 0.8
332,014 - 1.4
332,015 + 2.2
332,039 + 0.2
332,055 + 1.1
332,174 - 1.6
332,315 + -1.4
332,343 + 0.3
332,475 - 10205 mRNA_1837 0.12 -0.9
332,785 + 10205 mRNA_1837 0.20 0.0
332,788 + 10205 mRNA_1837 0.20 0.3
334,071 - 10205 mRNA_1837 0.52 -0.5
334,090 + 10205 mRNA_1837 0.53 -0.2
334,096 + 10205 mRNA_1837 0.53 0.3
334,309 + 10205 mRNA_1837 0.58 -0.2
334,589 + 10205 mRNA_1837 0.65 1.5
334,665 + 10205 mRNA_1837 0.67 0.4
334,819 - 10205 mRNA_1837 0.71 0.2
335,576 - -0.5
335,583 + -1.6
335,714 + 0.3
335,879 - -0.4
336,115 + -1.6
336,144 + -0.4
336,153 + -0.1
336,183 - 0.1
336,314 - 0.6
336,324 - 0.5
336,332 + -0.8
336,472 - -1.2