Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1753

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1752: 10120 - K15363 FAN1, MTMR15 fanconi-associated nuclease 1, at 115772 to 119229 10120 mRNA_1753: 10121 - BLAST ubiquitin ligase SCF complex subunit Cullin [Rhizocto..., at 119508 to 121647 10121 mRNA_1754: 10122 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 121684 to 123500 10122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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118,849 + 10120 mRNA_1752 0.89 0.6
119,011 - 0.8
119,018 + 0.6
119,020 - 0.4
119,155 + 0.1
119,233 - 0.6
119,282 - 0.6
119,312 + 1.1
119,314 + -0.0
119,330 - 0.3
119,343 + -0.6
119,444 - 0.2
119,446 - -0.9
119,459 + 0.2
119,470 + 0.5
119,604 + 1.3
119,729 - 10121 mRNA_1753 0.10 0.1
119,733 - 10121 mRNA_1753 0.11 0.3
119,734 - 10121 mRNA_1753 0.11 -1.7
119,884 + 10121 mRNA_1753 0.18 0.8
119,884 + 10121 mRNA_1753 0.18 -0.3
119,893 + 10121 mRNA_1753 0.18 1.5
119,934 - 10121 mRNA_1753 0.20 0.2
119,992 - 10121 mRNA_1753 0.23 0.2
120,013 - 10121 mRNA_1753 0.24 0.5
120,330 + 10121 mRNA_1753 0.38 0.0
120,725 - 10121 mRNA_1753 0.57 -0.2
120,809 + 10121 mRNA_1753 0.61 -0.4
120,922 - 10121 mRNA_1753 0.66 0.4
121,244 + 10121 mRNA_1753 0.81 0.2
121,444 - -0.2
121,599 - 1.9
121,731 - 0.2
121,748 - 0.1
121,884 + 10122 mRNA_1754 0.11 0.6
122,037 - 10122 mRNA_1754 0.19 0.0
122,054 + 10122 mRNA_1754 0.20 -0.1
122,152 - 10122 mRNA_1754 0.26 -0.0
122,240 + 10122 mRNA_1754 0.31 -1.0
122,460 - 10122 mRNA_1754 0.43 0.6
122,461 + 10122 mRNA_1754 0.43 -2.2
122,485 + 10122 mRNA_1754 0.44 -0.4
122,505 + 10122 mRNA_1754 0.45 -0.2
122,517 + 10122 mRNA_1754 0.46 1.5
122,518 + 10122 mRNA_1754 0.46 0.6