Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1728

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1727: 10095 - K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase, at 53103 to 55256 10095 mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55696 to 58007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58480 to 59986 10097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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55,207 + -0.9
55,218 + -0.2
55,247 + 2.2
55,250 - 0.0
55,255 + 1.1
55,362 - -0.1
55,532 + -0.0
55,655 - 0.8
55,795 - 2.6
55,808 + -0.9
55,958 - 10096 mRNA_1728 0.11 1.1
56,082 + 10096 mRNA_1728 0.17 -0.0
56,091 + 10096 mRNA_1728 0.17 1.0
56,195 - 10096 mRNA_1728 0.22 0.1
56,250 + 10096 mRNA_1728 0.24 0.9
56,546 - 10096 mRNA_1728 0.37 1.0
56,815 - 10096 mRNA_1728 0.48 0.3
57,116 - 10096 mRNA_1728 0.61 -0.1
57,321 - 10096 mRNA_1728 0.70 -0.6
57,702 - 10096 mRNA_1728 0.87 0.2
57,979 - 0.8
58,434 + -0.9
58,702 + 10097 mRNA_1729 0.15 0.5