Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34875 to 37390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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34,606 + 0.3
34,704 + 2.1
34,710 + 0.6
34,717 + 0.8
34,753 - -0.0
34,868 + -0.3
34,948 - -0.1
35,013 - 1.0
35,040 + 1.1
35,159 - 10090 mRNA_1722 0.11 0.1
35,168 + 10090 mRNA_1722 0.12 -0.4
35,466 + 10090 mRNA_1722 0.23 0.5
35,672 + 10090 mRNA_1722 0.32 0.0
35,841 + 10090 mRNA_1722 0.38 0.3
36,014 + 10090 mRNA_1722 0.45 0.4
36,174 - 10090 mRNA_1722 0.52 0.4
36,204 + 10090 mRNA_1722 0.53 0.1
36,285 + 10090 mRNA_1722 0.56 0.2
36,292 + 10090 mRNA_1722 0.56 0.2
36,324 + 10090 mRNA_1722 0.58 1.4
36,375 + 10090 mRNA_1722 0.60 0.3
36,465 + 10090 mRNA_1722 0.63 1.1
36,602 + 10090 mRNA_1722 0.69 -1.3
36,611 + 10090 mRNA_1722 0.69 0.4
36,720 - 10090 mRNA_1722 0.73 -0.3
36,746 + 10090 mRNA_1722 0.74 0.4
36,965 + 10090 mRNA_1722 0.83 0.3
37,032 - 10090 mRNA_1722 0.86 1.2
37,050 - 10090 mRNA_1722 0.86 -1.2
37,145 + -0.4
37,166 + 0.9
37,194 - 1.1
37,194 + 0.4
37,356 + -0.4
37,457 + 0.2
37,470 + 1.9
37,473 + 0.7
37,476 + -0.0
37,481 + 0.8
37,501 + -1.2
37,595 + 0.6
37,628 + 1.1
37,631 + 0.2
37,660 + 0.5
37,703 - 0.2
37,717 - 0.7
37,735 - 1.7
37,831 - 0.4
37,837 + 2.7
37,921 - -0.1
37,933 - -0.6
37,934 + 0.8
37,934 + -0.4
37,938 + 0.4
37,950 - 0.0
37,951 + -0.3
37,984 - 0.4
38,063 + 1.0
38,063 - 0.4
38,074 - -0.4
38,075 - 0.6
38,083 + 0.9
38,091 - 0.7
38,140 - 0.6
38,248 - 0.3
38,249 - 1.7
38,366 + 1.5
38,384 + -0.0