Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1709

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077 mRNA_1710: 10078 - Hypothetical Protein, at 7999 to 8750 10078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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4,055 + 10076 mRNA_1708 0.32 -1.5
4,063 - 10076 mRNA_1708 0.33 -0.3
4,072 - 10076 mRNA_1708 0.35 -0.5
4,093 - 10076 mRNA_1708 0.38 0.1
4,363 - 10076 mRNA_1708 0.82 -0.1
4,363 - 10076 mRNA_1708 0.82 -0.5
4,421 - 0.4
4,425 - 1.1
4,425 + 0.2
4,432 + 0.4
4,432 + 0.2
4,482 - 0.2
4,533 - -0.0
4,540 + 0.2
4,567 - 0.3
4,597 + -0.7
4,702 + 1.6
4,933 - 0.3
4,939 - -0.7
5,001 - 0.8
5,089 - -1.0
5,089 - -0.5
5,092 + 1.6
5,117 + 0.2
5,290 + 10077 mRNA_1709 0.11 -0.1
5,296 + 10077 mRNA_1709 0.11 0.1
5,365 + 10077 mRNA_1709 0.14 0.9
5,371 + 10077 mRNA_1709 0.14 0.3
5,372 + 10077 mRNA_1709 0.14 -2.2
5,424 + 10077 mRNA_1709 0.16 1.6
5,513 - 10077 mRNA_1709 0.20 1.7
5,634 - 10077 mRNA_1709 0.25 0.7
5,659 + 10077 mRNA_1709 0.26 -0.3
5,681 - 10077 mRNA_1709 0.27 -0.3
5,681 - 10077 mRNA_1709 0.27 0.4
5,694 - 10077 mRNA_1709 0.28 1.2
5,726 + 10077 mRNA_1709 0.29 0.2
5,809 + 10077 mRNA_1709 0.32 -1.7
5,926 + 10077 mRNA_1709 0.37 1.0
6,007 + 10077 mRNA_1709 0.41 0.3
6,120 + 10077 mRNA_1709 0.45 0.1
6,140 + 10077 mRNA_1709 0.46 0.5
6,238 - 10077 mRNA_1709 0.50 0.6
6,244 - 10077 mRNA_1709 0.50 0.2
6,245 + 10077 mRNA_1709 0.50 -0.2
6,249 + 10077 mRNA_1709 0.51 2.1
6,318 + 10077 mRNA_1709 0.54 0.0
6,468 - 10077 mRNA_1709 0.60 1.7
6,474 + 10077 mRNA_1709 0.60 0.2
6,541 + 10077 mRNA_1709 0.63 0.2
6,563 + 10077 mRNA_1709 0.64 0.1
6,583 + 10077 mRNA_1709 0.64 0.3
6,590 + 10077 mRNA_1709 0.65 -0.1
6,688 + 10077 mRNA_1709 0.69 0.3
6,704 + 10077 mRNA_1709 0.70 0.4
7,174 + 10077 mRNA_1709 0.89 1.4
7,276 + -0.4
7,408 + 1.7
7,596 - 1.2
7,805 + 0.5
7,859 + 1.4
7,859 + 0.5
7,901 - -0.2
7,922 + 0.7
7,992 - 0.7
8,039 + -0.5
8,042 - 0.3
8,047 + -0.2
8,068 + 0.5
8,234 + 10078 mRNA_1710 0.31 0.5
8,331 + 10078 mRNA_1710 0.44 -0.6
8,341 - 10078 mRNA_1710 0.45 0.2