Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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215 + -0.2
220 - -1.3
234 + 1.1
254 - 0.0
283 + 0.6
304 + 0.2
322 + 1.4
324 + -0.4
427 + 0.5
453 + 10074 mRNA_1706 0.13 0.1
465 - 10074 mRNA_1706 0.14 2.8
482 + 10074 mRNA_1706 0.16 0.3
493 - 10074 mRNA_1706 0.18 1.6
647 + 10074 mRNA_1706 0.36 -0.4
683 - 10074 mRNA_1706 0.40 0.9
809 + 10074 mRNA_1706 0.55 0.8
842 - 10074 mRNA_1706 0.59 -0.0
844 + 10074 mRNA_1706 0.59 -0.3
848 - 10074 mRNA_1706 0.59 -0.5
902 + 10074 mRNA_1706 0.66 1.0
949 - 10074 mRNA_1706 0.71 1.4
949 - 10074 mRNA_1706 0.71 -1.2
950 + 10074 mRNA_1706 0.71 0.5
974 - 10074 mRNA_1706 0.74 0.1
1,016 + 10074 mRNA_1706 0.79 1.0
1,065 + 10074 mRNA_1706 0.85 -0.5
1,118 + 0.3
1,142 + -0.3
1,155 + 0.6
1,272 - 0.6
1,281 + 1.4
1,573 + 10075 mRNA_1707 0.23 1.1
1,625 + 10075 mRNA_1707 0.27 0.5
1,625 + 10075 mRNA_1707 0.27 -0.2
1,628 + 10075 mRNA_1707 0.27 0.8
1,646 + 10075 mRNA_1707 0.28 1.1
1,649 - 10075 mRNA_1707 0.28 0.7
1,680 + 10075 mRNA_1707 0.30 -0.3
1,781 + 10075 mRNA_1707 0.36 0.7
1,926 + 10075 mRNA_1707 0.45 0.7
1,996 + 10075 mRNA_1707 0.49 1.5
2,005 - 10075 mRNA_1707 0.50 0.2
2,010 - 10075 mRNA_1707 0.50 0.5
2,033 + 10075 mRNA_1707 0.51 0.6
2,068 + 10075 mRNA_1707 0.53 1.0
2,076 + 10075 mRNA_1707 0.54 0.5
2,209 - 10075 mRNA_1707 0.62 1.1
2,352 + 10075 mRNA_1707 0.71 -0.3
2,449 - 10075 mRNA_1707 0.77 0.3
2,472 - 10075 mRNA_1707 0.78 0.9
2,475 + 10075 mRNA_1707 0.78 -0.5
2,501 + 10075 mRNA_1707 0.80 -0.8
2,923 + -0.0
3,038 - 0.3
3,062 + 0.7
3,198 - 0.5
3,200 + 0.8
3,208 + 0.4
3,333 + 0.4
3,347 - 0.2
3,348 - 0.3
3,381 + 0.7
3,459 + 0.2
3,634 - 1.1
3,791 + 0.3