Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1695

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914848 to 915614 10062 mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916247 to 917394 10063 mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917668 to 919209 10064

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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915,260 - 10062 mRNA_1694 0.54 0.8
915,435 - 10062 mRNA_1694 0.77 0.6
915,436 + 10062 mRNA_1694 0.77 1.5
915,436 - 10062 mRNA_1694 0.77 0.2
915,562 + 0.2
915,842 - 1.1
915,889 - -0.5
916,132 + 0.5
916,152 + -0.7
916,311 + 0.2
916,408 - 10063 mRNA_1695 0.14 -0.6
916,438 - 10063 mRNA_1695 0.17 0.9
916,579 + 10063 mRNA_1695 0.29 0.9
916,579 + 10063 mRNA_1695 0.29 0.4
916,588 - 10063 mRNA_1695 0.30 0.2
916,691 - 10063 mRNA_1695 0.39 -0.2
916,692 + 10063 mRNA_1695 0.39 -0.1
916,901 + 10063 mRNA_1695 0.57 0.0
916,979 + 10063 mRNA_1695 0.64 -0.6
917,309 - 0.2
917,316 + 0.6
917,592 - -0.0
917,682 - -0.2
917,725 - -0.3
918,024 + 10064 mRNA_1696 0.23 -0.1
918,129 + 10064 mRNA_1696 0.30 0.2
918,218 - 10064 mRNA_1696 0.36 0.7
918,324 - 10064 mRNA_1696 0.43 1.1