Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1693

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908144 to 911524 10060 mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911784 to 914454 10061 mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914848 to 915614 10062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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911,151 - 10060 mRNA_1692 0.89 0.7
911,463 + 0.3
911,592 - 0.1
911,622 + 0.7
911,635 - -0.1
911,773 + 0.7
911,777 + 1.6
911,933 - 0.6
911,999 - 0.2
912,026 - 0.1
912,307 + 10061 mRNA_1693 0.20 1.0
912,451 - 10061 mRNA_1693 0.25 -0.2
912,582 + 10061 mRNA_1693 0.30 0.3
912,869 - 10061 mRNA_1693 0.41 -1.0
912,875 + 10061 mRNA_1693 0.41 -0.6
912,938 - 10061 mRNA_1693 0.43 -0.5
912,996 - 10061 mRNA_1693 0.45 -0.5
913,006 + 10061 mRNA_1693 0.46 0.1
913,062 + 10061 mRNA_1693 0.48 0.7
913,179 + 10061 mRNA_1693 0.52 0.3
913,210 + 10061 mRNA_1693 0.53 0.6
913,312 - 10061 mRNA_1693 0.57 0.4
913,343 - 10061 mRNA_1693 0.58 2.3
913,413 - 10061 mRNA_1693 0.61 1.1
913,483 - 10061 mRNA_1693 0.64 0.3
913,704 + 10061 mRNA_1693 0.72 1.9
913,728 + 10061 mRNA_1693 0.73 -0.8
913,917 - 10061 mRNA_1693 0.80 -0.2
913,921 + 10061 mRNA_1693 0.80 0.2
914,048 + 10061 mRNA_1693 0.85 0.9
914,114 - 10061 mRNA_1693 0.87 1.2
914,261 - 0.4
914,455 + -0.6
914,788 + 0.1
914,798 - 0.6
914,799 - -0.4
914,799 + 0.4
914,801 + 0.4
914,824 - 0.4
914,922 - 0.3
914,953 - 10062 mRNA_1694 0.14 -0.3
914,977 + 10062 mRNA_1694 0.17 0.9
915,020 - 10062 mRNA_1694 0.22 1.3
915,123 - 10062 mRNA_1694 0.36 0.2
915,169 - 10062 mRNA_1694 0.42 1.6
915,260 - 10062 mRNA_1694 0.54 0.8
915,435 - 10062 mRNA_1694 0.77 0.6
915,436 + 10062 mRNA_1694 0.77 1.5
915,436 - 10062 mRNA_1694 0.77 0.2