Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1689

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1688: 10056 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 895835 to 896742 10056 mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897050 to 899959 10057 mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900281 to 902715 10058

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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896,599 - 10056 mRNA_1688 0.84 0.9
896,732 - 0.8
896,886 - 1.1
896,912 - 0.4
896,970 - 0.4
897,083 - 0.3
897,170 - 1.4
897,333 + 1.7
897,355 + 10057 mRNA_1689 0.10 0.1
897,468 - 10057 mRNA_1689 0.14 1.4
897,532 + 10057 mRNA_1689 0.17 -0.3
897,723 - 10057 mRNA_1689 0.23 0.2
897,769 + 10057 mRNA_1689 0.25 0.8
897,845 - 10057 mRNA_1689 0.27 2.0
897,870 + 10057 mRNA_1689 0.28 -0.0
897,920 + 10057 mRNA_1689 0.30 -0.1
897,929 - 10057 mRNA_1689 0.30 0.9
897,935 + 10057 mRNA_1689 0.30 1.0
897,949 - 10057 mRNA_1689 0.31 0.6
897,968 - 10057 mRNA_1689 0.32 -0.3
897,977 + 10057 mRNA_1689 0.32 -0.4
897,998 + 10057 mRNA_1689 0.33 0.5
898,047 - 10057 mRNA_1689 0.34 0.8
898,059 - 10057 mRNA_1689 0.35 0.5
898,120 + 10057 mRNA_1689 0.37 0.3
898,132 - 10057 mRNA_1689 0.37 0.4
898,179 - 10057 mRNA_1689 0.39 0.9
898,264 + 10057 mRNA_1689 0.42 -0.6
898,346 - 10057 mRNA_1689 0.45 0.8
898,535 - 10057 mRNA_1689 0.51 0.4
898,676 - 10057 mRNA_1689 0.56 1.0
898,683 + 10057 mRNA_1689 0.56 0.8
898,962 - 10057 mRNA_1689 0.66 0.6
898,971 - 10057 mRNA_1689 0.66 -0.1
898,984 - 10057 mRNA_1689 0.66 0.2
899,401 - 10057 mRNA_1689 0.81 1.7
899,708 + 0.0
899,864 + 1.2
900,288 + 0.5
900,723 - 10058 mRNA_1690 0.18 0.1