Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1643

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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789,439 - 10010 mRNA_1642 0.58 0.4
789,465 - 10010 mRNA_1642 0.60 0.9
789,547 + 10010 mRNA_1642 0.67 1.5
789,620 + 10010 mRNA_1642 0.73 0.4
790,019 + 1.0
790,026 - -0.8
790,048 - 1.1
790,057 + -0.2
790,139 - -0.5
790,167 + 0.1
790,184 - 0.4
790,201 + 0.8
790,337 - 1.6
790,348 + 1.4
790,350 - -0.0
790,353 - 0.4
790,359 - -0.3
790,487 - 0.6
790,490 + 1.6
790,496 - -0.6
790,508 + 0.5
790,646 - 10011 mRNA_1643 0.10 -1.0
790,648 + 10011 mRNA_1643 0.10 0.1
791,239 - 10011 mRNA_1643 0.37 -0.7
792,092 - 10011 mRNA_1643 0.76 0.7
792,253 + 10011 mRNA_1643 0.83 -0.1
792,274 - 10011 mRNA_1643 0.84 0.8
792,291 - 10011 mRNA_1643 0.85 0.6
792,315 - 10011 mRNA_1643 0.86 0.8
792,558 - -0.3
792,575 + 0.3
792,683 + 0.1
792,703 + -0.6
792,714 + -0.3
792,715 - -1.6
792,746 - 0.4
792,874 - -0.3
792,876 - 0.6
792,878 + 0.4
792,879 - 0.5
792,902 - 0.5
792,903 - 0.3
793,005 + 0.6
793,054 - 10012 mRNA_1644 0.12 1.9
793,334 + 10012 mRNA_1644 0.25 -1.0