Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1549

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1548: 9916 - K07937 ARF1 ADP-ribosylation factor 1, at 566553 to 567814 9916 mRNA_1549: 9917 - BLAST putative TspO/MBR family containing protein [Rhizocto..., at 568669 to 569316 9917 mRNA_1550: 9918 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 569375 to 570862 9918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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567,983 + 0.2
568,171 - -0.4
568,282 - -1.3
568,295 - -0.8
568,444 - 1.4
568,450 - -0.2
568,461 + 0.6
568,583 + 0.9
568,864 - 9917 mRNA_1549 0.30 0.1
568,905 + 9917 mRNA_1549 0.36 -0.9
568,919 - 9917 mRNA_1549 0.39 -0.6
569,026 - 9917 mRNA_1549 0.55 0.2
569,044 + 9917 mRNA_1549 0.58 -0.2
569,189 + 9917 mRNA_1549 0.80 -0.5
569,311 + 1.0
569,342 + 0.2
569,465 - 0.4
569,468 + 1.6
569,875 - 9918 mRNA_1550 0.34 -0.4