Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1522

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1521: 9889 - HMMPfam-DNA polymerase delta, subunit 4-PF04081, at 501491 to 502163 9889 mRNA_1522: 9890 - K06685 MOB1, Mats MOB kinase activator 1, at 502826 to 504110 9890 mRNA_1523: 9891 - Hypothetical Protein, at 504257 to 504927 9891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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501,993 + 9889 mRNA_1521 0.75 -0.6
502,138 - 1.2
502,143 + 1.4
502,147 + 0.1
502,169 - -0.2
502,170 + -0.4
502,171 - -0.8
502,314 + 0.5
502,440 - 0.7
502,441 + -0.7
502,451 + 0.1
502,457 - -1.6
502,475 + -0.4
502,575 - -0.1
502,609 + 0.4
502,611 + 0.9
502,626 + 1.7
502,899 + -0.1
503,455 - 9890 mRNA_1522 0.49 1.0
503,475 + 9890 mRNA_1522 0.51 1.4
503,478 - 9890 mRNA_1522 0.51 0.7
503,488 + 9890 mRNA_1522 0.52 1.1
503,611 + 9890 mRNA_1522 0.61 -0.6
503,886 - 9890 mRNA_1522 0.82 -0.2
504,058 + -0.1
504,075 - -0.1
504,212 + 0.2
504,353 - 9891 mRNA_1523 0.14 0.1
504,362 - 9891 mRNA_1523 0.16 -1.2
504,363 + 9891 mRNA_1523 0.16 -1.5
504,367 - 9891 mRNA_1523 0.16 -1.9
504,367 + 9891 mRNA_1523 0.16 0.4
504,522 + 9891 mRNA_1523 0.39 -0.2
504,806 - 9891 mRNA_1523 0.82 -0.1
504,826 + 9891 mRNA_1523 0.85 0.1
505,105 + -0.8
505,107 + -0.0