Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1517

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884 mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494782 to 496298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496923 to 498027 9886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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493,826 - -0.2
493,853 + 0.2
493,863 + -0.2
493,867 + -0.0
493,908 - 0.4
493,923 - 1.4
493,926 + -0.1
493,939 - -0.2
493,943 - 0.1
493,951 - 0.0
493,977 - 1.1
494,022 + 0.3
494,025 + 0.0
494,033 + -0.5
494,033 - -0.0
494,037 + 0.3
494,039 - 0.3
494,054 - -1.1
494,060 + -0.2
494,112 - -0.3
494,114 - 0.0
494,115 + 0.2
494,120 - 0.8
494,124 + 1.6
494,127 + -0.3
494,131 + -0.8
494,132 - 0.2
494,163 - 0.4
494,169 + 1.3
494,184 + 1.1
494,195 - 0.1
494,204 + -0.6
494,204 - 0.4
494,214 + -0.1
494,214 - -0.3
494,219 + -0.1
494,219 + -0.3
494,229 + -1.2
494,240 + 0.2
494,240 + -0.1
494,241 + -0.2
494,261 + -1.0
494,271 - 0.1
494,271 - -0.3
494,277 + -0.2
494,286 - -0.1
494,287 - -0.0
494,289 - -0.2
494,291 + -0.7
494,292 + -0.6
494,311 - 1.1
494,311 - 0.8
494,318 + 1.9
494,318 + -0.1
494,321 + -1.0
494,321 + 0.1
494,323 - 1.7
494,325 - 0.0
494,326 - -0.2
494,330 - 0.4
494,330 + -0.1
494,332 + 0.0
494,335 + 0.0
494,343 + 0.5
494,390 + -1.6
494,431 + 1.2
494,450 + 0.4
494,473 + 0.8
494,475 + -0.1
494,530 + 0.4
494,572 + -0.2
494,583 + -0.7
494,594 + 0.1
494,625 - 0.0
494,626 + -0.6
494,654 - 0.5
494,658 + -0.4
494,687 - -0.2
494,740 - -0.1
494,791 + -0.2
494,823 + -0.6
494,880 + -0.0
494,901 - -0.3
494,919 - 0.5
494,967 + 9885 mRNA_1517 0.12 0.4
494,981 - 9885 mRNA_1517 0.13 -0.3
495,002 + 9885 mRNA_1517 0.15 -0.0
495,006 + 9885 mRNA_1517 0.15 0.1
495,054 - 9885 mRNA_1517 0.18 -0.8
495,125 + 9885 mRNA_1517 0.23 0.7
495,151 - 9885 mRNA_1517 0.24 -0.8
495,156 + 9885 mRNA_1517 0.25 -0.1
495,216 - 9885 mRNA_1517 0.29 0.9
495,216 - 9885 mRNA_1517 0.29 -0.4
495,356 - 9885 mRNA_1517 0.38 -0.9
495,470 + 9885 mRNA_1517 0.45 -0.1
495,479 + 9885 mRNA_1517 0.46 -1.1
496,039 - 9885 mRNA_1517 0.83 -0.5
496,039 - 9885 mRNA_1517 0.83 -0.7
496,317 + -0.2
496,346 - 0.2
496,400 - -0.3
496,466 + 0.4
496,476 + -0.3
496,488 + -0.3
496,556 + 0.3
496,578 - -0.3
496,595 + -0.2
496,596 + 0.2
496,606 + -0.7
496,613 + -0.4
496,652 - -0.7
496,690 + 0.2
496,691 + 0.2
496,696 + -0.1
496,696 + -0.4
496,699 - -0.5
496,716 - -0.7
496,753 - 0.1
496,772 - 0.7
496,772 - 1.2
496,772 - 0.4
496,782 + 0.5
496,785 - 0.0
496,787 + -0.5
496,789 + 0.8
496,795 + 0.3
496,799 + 0.1
496,799 + -0.6
496,806 + -0.3
496,823 + 0.3
496,909 + -0.2
497,184 + 9886 mRNA_1518 0.24 0.9