Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1489

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429512 to 431122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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427,263 + 1.2
427,264 - 0.8
427,264 + 0.1
427,282 + 0.5
427,291 + 0.4
427,426 + -0.0
427,438 + -0.1
427,438 - 1.6
427,455 - 0.6
427,468 + -0.3
427,518 + 0.2
427,544 - -0.2
427,575 + 0.5
427,576 - -0.3
427,580 + 0.3
427,598 + -1.3
427,703 - -0.8
427,719 - -0.3
427,725 - 1.2
427,730 - 0.4
427,730 - -1.9
427,746 - 1.2
427,766 - -1.1
427,766 + -0.7
427,773 + -1.1
427,774 + 0.5
427,907 - 0.2
427,948 + -0.5
427,949 + -0.0
427,952 + -1.2
427,991 + -1.7
428,272 + -0.4
428,361 - 9857 mRNA_1489 0.14 1.1
428,405 + 9857 mRNA_1489 0.19 -0.3
428,499 + 9857 mRNA_1489 0.30 -0.5
428,793 + 9857 mRNA_1489 0.64 -0.1
428,802 + 9857 mRNA_1489 0.66 -1.7
429,226 + 0.9
429,364 - -0.4
429,381 + 0.3
429,389 - 0.5
429,389 + -0.1
429,393 - -0.2
429,413 + 1.1
429,513 - -1.9
429,567 - -0.1
429,809 + 9858 mRNA_1490 0.18 -0.9
429,962 - 9858 mRNA_1490 0.28 -0.7
429,995 - 9858 mRNA_1490 0.30 0.2