Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1488

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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423,352 - -0.2
423,472 - 1.2
423,604 - 0.5
423,724 - 0.5
423,778 + 9856 mRNA_1488 0.10 0.8
423,835 + 9856 mRNA_1488 0.12 -0.1
424,172 + 9856 mRNA_1488 0.19 -0.3
424,221 - 9856 mRNA_1488 0.21 -0.6
424,416 - 9856 mRNA_1488 0.25 0.0
424,520 + 9856 mRNA_1488 0.27 0.0
424,601 + 9856 mRNA_1488 0.29 -0.3
424,906 - 9856 mRNA_1488 0.36 1.3
425,060 + 9856 mRNA_1488 0.40 -0.6
425,061 - 9856 mRNA_1488 0.40 -1.0
425,496 + 9856 mRNA_1488 0.50 0.1
425,697 + 9856 mRNA_1488 0.55 0.6
425,708 - 9856 mRNA_1488 0.55 1.2
425,820 + 9856 mRNA_1488 0.57 -0.3
425,823 - 9856 mRNA_1488 0.57 0.7
426,112 - 9856 mRNA_1488 0.64 -0.3
426,517 - 9856 mRNA_1488 0.73 0.3
426,649 - 9856 mRNA_1488 0.76 0.3
427,144 - 9856 mRNA_1488 0.88 -0.8
427,153 + 9856 mRNA_1488 0.88 -0.0
427,159 + 9856 mRNA_1488 0.88 -1.0
427,238 - 0.3
427,238 + -0.1
427,239 + 0.1
427,263 + 1.2
427,264 - 0.8
427,264 + 0.1
427,282 + 0.5
427,291 + 0.4
427,426 + -0.0
427,438 + -0.1
427,438 - 1.6
427,455 - 0.6
427,468 + -0.3
427,518 + 0.2
427,544 - -0.2
427,575 + 0.5
427,576 - -0.3
427,580 + 0.3
427,598 + -1.3
427,703 - -0.8
427,719 - -0.3
427,725 - 1.2
427,730 - 0.4
427,730 - -1.9
427,746 - 1.2
427,766 - -1.1
427,766 + -0.7
427,773 + -1.1
427,774 + 0.5
427,907 - 0.2
427,948 + -0.5
427,949 + -0.0
427,952 + -1.2
427,991 + -1.7
428,272 + -0.4
428,361 - 9857 mRNA_1489 0.14 1.1
428,405 + 9857 mRNA_1489 0.19 -0.3
428,499 + 9857 mRNA_1489 0.30 -0.5