Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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413,277 - 9853 mRNA_1485 0.38 1.0
413,446 - 9853 mRNA_1485 0.54 -0.8
413,574 - 9853 mRNA_1485 0.66 -0.2
413,645 + 9853 mRNA_1485 0.73 -0.2
413,710 + 9853 mRNA_1485 0.79 0.0
413,843 - 0.1
413,907 + -0.8
414,189 - 0.1
414,190 + -1.6
414,242 + 0.5
414,471 + 2.1
414,871 - 9854 mRNA_1486 0.16 -0.1
415,018 + 9854 mRNA_1486 0.19 -0.1
415,042 + 9854 mRNA_1486 0.19 -0.0
415,049 - 9854 mRNA_1486 0.19 -0.3
415,203 + 9854 mRNA_1486 0.22 -0.6
415,322 - 9854 mRNA_1486 0.24 -1.0
415,467 - 9854 mRNA_1486 0.27 -0.3
415,496 - 9854 mRNA_1486 0.27 -0.6
415,509 + 9854 mRNA_1486 0.28 -1.9
415,539 + 9854 mRNA_1486 0.28 0.2
415,545 - 9854 mRNA_1486 0.28 0.2
415,705 - 9854 mRNA_1486 0.31 -1.0
415,912 + 9854 mRNA_1486 0.35 -1.5
415,938 - 9854 mRNA_1486 0.36 0.2
415,943 - 9854 mRNA_1486 0.36 -0.8
416,025 - 9854 mRNA_1486 0.37 -0.8
416,067 + 9854 mRNA_1486 0.38 1.3
416,215 - 9854 mRNA_1486 0.41 1.4
416,392 + 9854 mRNA_1486 0.44 1.0
416,529 - 9854 mRNA_1486 0.47 0.0
416,530 + 9854 mRNA_1486 0.47 0.0
416,690 + 9854 mRNA_1486 0.50 0.3
416,730 - 9854 mRNA_1486 0.50 0.0
416,743 - 9854 mRNA_1486 0.51 1.1
416,754 + 9854 mRNA_1486 0.51 0.2
417,131 + 9854 mRNA_1486 0.58 0.2
417,184 + 9854 mRNA_1486 0.59 -0.3
417,268 + 9854 mRNA_1486 0.60 -1.3
417,301 - 9854 mRNA_1486 0.61 -1.3
417,366 - 9854 mRNA_1486 0.62 -1.6
417,812 + 9854 mRNA_1486 0.70 0.5
417,931 + 9854 mRNA_1486 0.73 0.2
417,984 + 9854 mRNA_1486 0.74 -0.8
418,175 - 9854 mRNA_1486 0.77 1.0
418,283 - 9854 mRNA_1486 0.79 0.5
418,345 + 9854 mRNA_1486 0.80 -0.7
418,634 - 9854 mRNA_1486 0.86 -0.4
418,790 + 9854 mRNA_1486 0.88 -0.5
418,828 - 9854 mRNA_1486 0.89 1.0
419,060 + 0.8
419,064 - 0.4
419,129 - -0.0
419,222 + 0.4
419,388 - -2.8
419,393 + 0.0
419,479 - -2.0
419,488 + -0.4
419,532 - 0.3
419,537 - 0.5
419,545 + -1.7
419,682 - 0.6
419,702 + 0.1
419,785 + 0.1
419,840 + 0.9