Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1458

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1457: 9825 - K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, at 336305 to 339274 9825 mRNA_1458: 9826 - K17775 MDM34, MMM2 mitochondrial distribution and morphology protein 34, at 339999 to 342727 9826 mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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339,024 + 1.4
339,287 + 0.8
339,288 + 0.5
339,292 - 1.1
339,307 - 0.4
339,425 - -0.1
339,444 - -0.0
339,466 - -0.8
339,471 - -0.5
339,471 - 1.0
339,471 - -0.5
339,473 - 0.5
339,473 - 0.2
339,474 + -0.4
339,477 + -0.3
339,481 + 0.3
339,483 + -0.2
339,485 + -0.3
339,488 - -0.7
339,490 + -0.2
339,494 - -0.9
339,495 + -0.7
339,496 - -0.4
339,594 - -0.9
339,623 + 0.5
339,670 - -0.2
339,672 - -0.3
339,679 + 0.9
339,681 + -0.2
339,777 - -1.3
339,788 - -0.7
339,795 + -0.1
339,808 - 1.0
339,811 - -0.8
339,815 - 0.2
339,822 + -0.8
339,979 + -0.2
341,528 - 9826 mRNA_1458 0.56 -0.1
341,567 - 9826 mRNA_1458 0.57 -1.6
341,680 + 9826 mRNA_1458 0.62 -0.1
341,839 + 9826 mRNA_1458 0.67 -1.2
341,939 - 9826 mRNA_1458 0.71 -0.5
342,439 + 9826 mRNA_1458 0.89 0.6
343,440 + 9827 mRNA_1459 0.44 -0.0
343,440 - 9827 mRNA_1459 0.44 0.1
343,674 + 9827 mRNA_1459 0.63 0.1
343,677 + 9827 mRNA_1459 0.64 0.1
343,699 - 9827 mRNA_1459 0.65 -1.2