Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1441

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1440: 9808 - Hypothetical Protein, at 284752 to 285459 9808 mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285760 to 287814 9809 mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288246 to 290884 9810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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284,810 - -0.2
285,088 + 9808 mRNA_1440 0.47 -0.2
285,092 - 9808 mRNA_1440 0.48 -0.3
285,356 - 9808 mRNA_1440 0.85 0.2
285,645 + 0.6
285,689 + -0.7
285,999 + 9809 mRNA_1441 0.12 0.6
286,087 + 9809 mRNA_1441 0.16 -0.3
286,093 + 9809 mRNA_1441 0.16 0.7
286,109 + 9809 mRNA_1441 0.17 -0.4
286,125 + 9809 mRNA_1441 0.18 0.5
286,456 + 9809 mRNA_1441 0.34 -0.3
286,616 - 9809 mRNA_1441 0.42 -0.8
286,686 - 9809 mRNA_1441 0.45 0.3
286,706 + 9809 mRNA_1441 0.46 -1.2
286,973 + 9809 mRNA_1441 0.59 -0.6
287,300 + 9809 mRNA_1441 0.75 -0.8
287,409 - 9809 mRNA_1441 0.80 1.5
287,430 - 9809 mRNA_1441 0.81 -0.1
287,738 + 0.2
287,739 + 0.3
287,803 + -0.7
287,852 - 1.2
287,882 + 1.6
287,893 - -0.2
287,915 - -0.1
288,355 + 0.4
288,455 - -0.4
288,470 - -0.5
288,730 + 9810 mRNA_1442 0.18 0.4
288,740 + 9810 mRNA_1442 0.19 0.3
288,752 - 9810 mRNA_1442 0.19 -0.8
288,759 + 9810 mRNA_1442 0.19 -0.4