Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1379

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746 mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134077 to 136225 9747 mRNA_1380: 9748 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 136828 to 138135 9748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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133,099 - 9746 mRNA_1378 0.76 -0.9
133,105 + 9746 mRNA_1378 0.76 1.9
133,317 + 9746 mRNA_1378 0.82 -0.3
133,441 - 9746 mRNA_1378 0.85 0.1
133,507 + 9746 mRNA_1378 0.87 1.9
133,625 - -0.2
133,696 - -0.2
134,093 - 0.5
134,259 + -0.8
134,368 - 9747 mRNA_1379 0.14 -0.3
134,416 + 9747 mRNA_1379 0.16 0.7
134,476 + 9747 mRNA_1379 0.19 0.2
134,567 + 9747 mRNA_1379 0.23 0.4
134,764 - 9747 mRNA_1379 0.32 1.7
134,768 - 9747 mRNA_1379 0.32 1.8
134,774 - 9747 mRNA_1379 0.32 -0.2
134,879 - 9747 mRNA_1379 0.37 -0.4
134,946 + 9747 mRNA_1379 0.40 -0.2
134,947 - 9747 mRNA_1379 0.40 -0.8
134,962 + 9747 mRNA_1379 0.41 -0.3
135,257 - 9747 mRNA_1379 0.55 -0.3
135,387 - 9747 mRNA_1379 0.61 0.0
135,452 - 9747 mRNA_1379 0.64 0.2
135,690 - 9747 mRNA_1379 0.75 -0.5
136,159 + 0.5
136,261 - -0.2
136,268 + 0.7
136,269 - -0.2
136,282 + -1.0
136,292 - 0.2
136,435 - 0.9
136,436 - 0.1
136,570 + -0.4
136,570 - -0.3
136,583 + 0.4
136,599 + 2.0
136,729 + -0.1
136,730 - -0.4
136,756 + -0.6