Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1339

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1338: 9706 - SUPERFAMILY--SSF52047, at 31623 to 33145 9706 mRNA_1339: 9707 - Hypothetical Protein, at 33554 to 34142 9707 mRNA_1340: 9708 - KOG3968 Atrazine chlorohydrolase/guanine deaminase, at 34263 to 36045 9708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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32,678 + 9706 mRNA_1338 0.69 1.1
32,848 + 9706 mRNA_1338 0.80 -0.9
32,867 - 9706 mRNA_1338 0.82 -0.9
32,966 - 9706 mRNA_1338 0.88 0.8
33,122 + -0.5
33,132 - 0.9
33,132 - -0.0
33,135 - 0.4
33,142 + -0.4
33,275 - -0.7
33,279 - -0.3
33,291 + 1.4
33,424 - 0.3
33,429 + 0.6
33,532 - 0.9
33,579 - -0.0
33,583 + 0.9
33,596 - -1.6
33,617 + 9707 mRNA_1339 0.11 -0.4
33,627 + 9707 mRNA_1339 0.12 0.0
33,644 - 9707 mRNA_1339 0.15 1.4
33,669 - 9707 mRNA_1339 0.20 -0.7
33,697 + 9707 mRNA_1339 0.24 0.6
33,773 - 9707 mRNA_1339 0.37 1.0
33,780 - 9707 mRNA_1339 0.38 -0.2
34,141 + -1.0
34,179 + -0.2
34,336 - 0.1
34,340 + 0.1
34,391 - -0.4
34,635 - 9708 mRNA_1340 0.21 -0.1
34,661 + 9708 mRNA_1340 0.22 1.2
34,945 - 9708 mRNA_1340 0.38 0.6