Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1316

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903446 to 907323 9683 mRNA_1316: 9684 - KOG4711 Predicted membrane protein, at 907427 to 911419 9684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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907,384 - -0.3
907,585 - 0.5
907,792 + 0.2
907,836 + 9684 mRNA_1316 0.10 1.5
908,327 - 9684 mRNA_1316 0.23 -0.4
908,382 + 9684 mRNA_1316 0.24 0.0
908,391 + 9684 mRNA_1316 0.24 -0.1
908,413 + 9684 mRNA_1316 0.25 0.3
908,534 - 9684 mRNA_1316 0.28 0.8
908,564 + 9684 mRNA_1316 0.28 -0.3
909,497 + 9684 mRNA_1316 0.52 0.3
909,498 - 9684 mRNA_1316 0.52 0.9
909,530 - 9684 mRNA_1316 0.53 1.2
909,559 + 9684 mRNA_1316 0.53 0.3
909,917 - 9684 mRNA_1316 0.62 -0.2
909,943 - 9684 mRNA_1316 0.63 -1.4
909,999 + 9684 mRNA_1316 0.64 -1.0
910,082 + 9684 mRNA_1316 0.66 -0.4
910,541 + 9684 mRNA_1316 0.78 -1.3
910,564 - 9684 mRNA_1316 0.79 -0.7
910,835 + 9684 mRNA_1316 0.85 -0.6
910,954 - 9684 mRNA_1316 0.88 0.1
911,155 - 1.4
911,576 + -0.1
911,714 + 0.1
911,718 - -0.5
911,719 + 0.6
911,857 + -0.1
911,868 - -0.5
911,997 + -0.0
912,000 - 1.0
912,000 - 0.2
912,007 + 0.8
912,009 - 1.4
912,010 - -0.1
912,015 - 0.6
912,020 + 1.5
912,022 - 0.3
912,023 + 0.0
912,024 + -0.2
912,027 + 2.1
912,033 - -0.2
912,034 + 1.5
912,039 + 0.7
912,053 + 0.2
912,099 - 0.2
912,103 - 0.2
912,105 - 0.1
912,106 + 0.2
912,109 + 1.1
912,111 + -1.1
912,111 - 0.8
912,113 + -1.3
912,115 - -0.3
912,116 - -0.8
912,117 - 0.3
912,118 - 0.5
912,120 - 0.3
912,121 - 0.3
912,123 + -0.9
912,123 - 0.5
912,123 + -0.9
912,123 + -0.1
912,124 - 0.6
912,124 - 0.1
912,125 - 0.1
912,125 - 0.3
912,125 - 0.7
912,125 + -0.0
912,126 + 1.1
912,129 - 0.2
912,129 - -0.0
912,129 - -0.1
912,133 + 0.1
912,136 + 0.5
912,138 - -0.4
912,139 - 0.1
912,140 - 0.3
912,145 - 0.1
912,154 + 0.2
912,161 - -0.9
912,167 + -0.8
912,168 - 0.0
912,175 + -1.3
912,304 + 0.1
912,401 + 0.2