Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1297

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856418 to 857945 9664 mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858467 to 858877 9665 mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859180 to 859998 9666

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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858,011 - -0.4
858,017 - -1.6
858,035 + 0.4
858,039 - -0.1
858,057 - -0.5
858,064 + -0.4
858,078 - -0.2
858,080 - -0.4
858,081 + 0.2
858,089 + -0.5
858,097 + 1.3
858,102 - 0.1
858,107 - -0.7
858,108 + 0.5
858,108 + 0.3
858,112 - -0.3
858,152 + -0.8
858,202 + 0.5
858,655 + 9665 mRNA_1297 0.46 1.0
858,790 + 9665 mRNA_1297 0.79 -0.0
858,931 - 0.4
858,934 + -0.9
858,968 + -0.0
858,984 - 0.5
859,110 - 1.2
859,137 - 0.4
859,245 + 0.2
859,415 - 9666 mRNA_1298 0.29 -1.6
859,421 - 9666 mRNA_1298 0.29 -0.2
859,568 - 9666 mRNA_1298 0.47 0.3
859,600 - 9666 mRNA_1298 0.51 -0.4
859,615 + 9666 mRNA_1298 0.53 0.8
859,761 - 9666 mRNA_1298 0.71 0.5
859,763 + 9666 mRNA_1298 0.71 1.0
859,764 - 9666 mRNA_1298 0.71 0.7
859,769 + 9666 mRNA_1298 0.72 0.5
859,769 - 9666 mRNA_1298 0.72 0.0
859,779 + 9666 mRNA_1298 0.73 -0.3
859,784 - 9666 mRNA_1298 0.74 -1.2
859,794 + 9666 mRNA_1298 0.75 -2.7
859,804 + 9666 mRNA_1298 0.76 -0.0
859,821 + 9666 mRNA_1298 0.78 0.2
859,845 + 9666 mRNA_1298 0.81 0.4
859,846 - 9666 mRNA_1298 0.81 -0.2
859,851 - 9666 mRNA_1298 0.82 1.1
859,854 - 9666 mRNA_1298 0.82 -0.5
859,856 + 9666 mRNA_1298 0.83 -0.7
859,857 - 9666 mRNA_1298 0.83 0.2
859,860 + 9666 mRNA_1298 0.83 -0.1
859,862 + 9666 mRNA_1298 0.83 0.3
859,865 - 9666 mRNA_1298 0.84 -0.5
859,867 + 9666 mRNA_1298 0.84 0.7
859,870 - 9666 mRNA_1298 0.84 -0.0
859,872 + 9666 mRNA_1298 0.84 -0.1
859,872 + 9666 mRNA_1298 0.84 -0.6