Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1275

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810580 to 813182 9642 mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813494 to 815725 9643 mRNA_1276: 9644 - K01070 frmB, ESD, fghA S-formylglutathione hydrolase, at 815898 to 817599 9644

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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812,579 + 9642 mRNA_1274 0.77 -0.4
812,604 + 9642 mRNA_1274 0.78 -0.0
812,687 - 9642 mRNA_1274 0.81 -1.9
813,176 - 1.5
813,219 - 1.5
813,470 + 0.7
813,618 - 1.4
813,672 + 0.4
813,740 + 9643 mRNA_1275 0.11 -0.1
813,804 + 9643 mRNA_1275 0.14 -1.0
814,057 + 9643 mRNA_1275 0.25 -0.7
814,450 - 9643 mRNA_1275 0.43 2.0
814,469 + 9643 mRNA_1275 0.44 -2.6
814,529 + 9643 mRNA_1275 0.46 0.9
814,532 + 9643 mRNA_1275 0.47 -0.5
814,572 - 9643 mRNA_1275 0.48 0.6
814,593 - 9643 mRNA_1275 0.49 -0.3
814,601 - 9643 mRNA_1275 0.50 -0.1
814,670 + 9643 mRNA_1275 0.53 0.3
815,057 + 9643 mRNA_1275 0.70 1.4
815,061 + 9643 mRNA_1275 0.70 0.2
815,378 - 9643 mRNA_1275 0.84 -0.2
815,490 - 9643 mRNA_1275 0.89 0.2
815,500 + 9643 mRNA_1275 0.90 -1.5
815,519 + -1.0
815,755 - -3.6
815,790 + 0.1
815,793 - -0.0
815,806 + 0.7
816,101 + 9644 mRNA_1276 0.12 -0.6
816,535 + 9644 mRNA_1276 0.37 1.1
816,554 + 9644 mRNA_1276 0.39 0.2