Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1270

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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799,623 - -0.2
799,635 - 0.2
799,778 - -0.9
799,917 + 1.0
799,946 + -0.2
799,974 - 0.5
800,046 - -0.1
800,083 - 0.1
800,125 - -0.0
800,198 - -0.2
800,220 - 2.1
800,240 - -1.5
800,242 + 0.1
800,245 + 0.9
800,246 - 0.5
800,247 + -0.1
800,366 + 0.5
800,508 - 0.0
800,516 + -0.1
800,593 - 1.2
800,637 - 0.1
800,652 - -0.0
800,694 - 1.1
800,711 - 0.8
800,721 + -0.1
800,961 + 9638 mRNA_1270 0.16 0.1
801,332 + 9638 mRNA_1270 0.32 0.8
801,398 + 9638 mRNA_1270 0.34 -0.5
801,401 + 9638 mRNA_1270 0.34 0.0
801,411 - 9638 mRNA_1270 0.35 0.2
801,669 - 9638 mRNA_1270 0.46 0.0
801,784 + 9638 mRNA_1270 0.51 0.1
801,854 - 9638 mRNA_1270 0.54 1.1
802,273 + 9638 mRNA_1270 0.72 0.1
802,283 + 9638 mRNA_1270 0.72 0.7
802,423 + 9638 mRNA_1270 0.78 -0.4
802,994 + 0.3
803,005 + 0.5
803,020 + 1.2
803,137 - -1.0
803,141 + -1.8
803,158 + -0.4
803,183 - 0.1
803,199 - 0.1
803,296 + -0.5
803,302 + -0.4
803,311 - -1.0
803,333 + -0.2
803,456 - 0.2
803,463 + 0.4
803,464 - 0.6
803,465 - 0.1
803,623 - 0.4
803,787 + 9639 mRNA_1271 0.11 -0.8
803,864 + 9639 mRNA_1271 0.13 -1.1
803,894 - 9639 mRNA_1271 0.14 -0.2